Keeps data whose values meet various threshold criteria. Keeps only spectra with peak counts within a given range.ĭeals with zero values in spectra - either removing them, or adding them where they are missing. Retains spectra with specific precursor m/z values.
Keeps mz/intensity pairs whose m/z values fall within the specified range. Details for the different criteria can be found in the GUI tooltips. Rejects ion trap data spectra with MS level 1.Īdd or replace a spectra’s TIC/BPI metadata, usually after peak picking where the change from profile to centroided data may make the TIC and BPI values inconsistent with the revised scan data.Īdds or replaces spectrum titles according to format string given. Reorders spectra, sorting them by ascending scan start time. Selects spectra within a given time range. If used with other filters this must be set first. Performs centroiding on spectra with the selected MS levels. Recalculates the precursor m/z and charge for MS2 spectra based on the MS1 data. Use 0 to include spectra with no charge state at all. Keeps spectra that match the listed charge state. Selects only spectra with the indicated MS levels. Selects spectra by index - an index value 0-based numerical order in which the spectrum appears in the input. Basic Protocol 2 is intended to assist researchers who need to convey their data to search engines requiring simpler text formats. Both protocols address the process of conversion from instrument vendor-specific raw data formats ( Table 1) to mzML ( Martens et al., 2011), mzXML ( Pedrioli et al., 2004), mz5 ( Wilhelm et al., 2012), or MGF ( ) format. Basic Protocol 1 is intended for first-time users of ProteoWizard who feel most comfortable with graphical user interfaces, while Alternate Protocol 1 will assist researchers who are comfortable in a command-line environment. The three protocols included here are intended to complement each other. It is distinctive for its support of instruments from many instrument vendors ( Chambers et al., 2012). The ProteoWizard library and tools are designed to extract data from these proprietary formats for export in community standard formats or for direct access via its API ( Kessner et al., 2008).
DAA CONVERTER FOR WINDOWS SOFTWARE
You can use the ConverterParameter of the Binding class to pass a parameter as an argument into the Convert and ConvertBack methods.Tandem mass spectrometry data sets are captured to binary files or databases by the software controlling the instruments. For example, you can write a formatting converter that produces different formats of data based on the input parameter that you use. The Convert and ConvertBack methods also have a parameter called parameter so that you can use the same instance of the converter with different parameters. If cultural information is irrelevant to the conversion, then you can ignore that parameter in your custom converter. Both the Convert and ConvertBack methods have a culture parameter that indicates the cultural information. For examples of some typical converter scenarios, see "Data Conversion" in Data Binding Overview. Converters can change data from one type to another, translate data based on cultural information, or modify other aspects of the presentation. If you want to associate a value converter with a binding, create a class that implements the IValueConverter interface and then implement the Convert and ConvertBack methods.
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